Org ad hoc code, quick hacks and workarounds

(let ((org-fake-release     "7.9.1")
      (org-fake-git-version "7.9.1-fake"))
  (org-make-autoloads))

(defvar my/org-lisp-directory "~/.emacs.d/org/lisp/"
  "Directory where your org-mode files live.")

(defvar my/org-compile-sources t
  "If `nil', never compile org-sources. `my/compile-org' will only create
the autoloads file `org-loaddefs.el' then. If `t', compile the sources, too.")

;; Customize: (must end with a slash!)
(setq my/org-lisp-directory "~/.emacs.d/org/lisp/")

;; Customize:
(setq  my/org-compile-sources t)

(defun my/compile-org(&optional directory)
  "Generate autoloads file org-loaddefs.el.  Optionally compile
   all *.el files that come with org-mode."
  (interactive)
  (defun my/compile-org()
    "Generate autoloads file org-loaddefs.el.  Optionally compile
     all *.el files that come with org-mode."
    (interactive)
    (let ((dirlisp (file-name-directory my/org-lisp-directory)))
      (add-to-list 'load-path dirlisp)
      (require 'autoload)
      (let ((generated-autoload-file (concat dirlisp "org-loaddefs.el")))
        ;; create the org-loaddefs file
        (update-directory-autoloads dirlisp)
        (when my/org-compile-sources
          ;; optionally byte-compile
          (byte-recompile-directory dirlisp 0 'force)))))

(defun dmaus/org-check-percent-escapes ()
  "*Check buffer for possibly problematic old link escapes."
  (interactive)
  (when (eq major-mode 'org-mode)
    (let ((old-escapes '("%20" "%5B" "%5D" "%E0" "%E2" "%E7" "%E8" "%E9"
                         "%EA" "%EE" "%F4" "%F9" "%FB" "%3B" "%3D" "%2B")))
      (unless (boundp 'warning-suppress-types)
        (setq warning-suppress-types nil))
      (widen)
      (show-all)
      (goto-char (point-min))
      (while (re-search-forward org-any-link-re nil t)
        (let ((end (match-end 0)))
          (goto-char (match-beginning 0))
          (while (re-search-forward "%[0-9a-zA-Z]\\{2\\}" end t)
            (let ((escape (match-string-no-properties 0)))
              (unless (member (upcase escape) old-escapes)
                (warn "Found unknown percent escape sequence %s at buffer %s, position %d"
                      escape
                      (buffer-name)
                      (- (point) 3)))))
          (goto-char end))))))

(defun ded/org-show-next-heading-tidily ()
  "Show next entry, keeping other entries closed."
  (if (save-excursion (end-of-line) (outline-invisible-p))
      (progn (org-show-entry) (show-children))
    (outline-next-heading)
    (unless (and (bolp) (org-on-heading-p))
      (org-up-heading-safe)
      (hide-subtree)
      (error "Boundary reached"))
    (org-overview)
    (org-reveal t)
    (org-show-entry)
    (show-children)))

(defun ded/org-show-previous-heading-tidily ()
  "Show previous entry, keeping other entries closed."
  (let ((pos (point)))
    (outline-previous-heading)
    (unless (and (< (point) pos) (bolp) (org-on-heading-p))
      (goto-char pos)
      (hide-subtree)
      (error "Boundary reached"))
    (org-overview)
    (org-reveal t)
    (org-show-entry)
    (show-children)))

(setq org-use-speed-commands t)
(add-to-list 'org-speed-commands-user
             '("n" ded/org-show-next-heading-tidily))
(add-to-list 'org-speed-commands-user
             '("p" ded/org-show-previous-heading-tidily))

(defun my-org-un-project ()
  (interactive)
  (org-map-entries 'org-do-promote "LEVEL>1" 'tree)
  (org-cycle t))

(defun dmj:turn-headline-into-org-mode-link ()
  "Replace word at point by an Org mode link."
  (interactive)
  (when (org-at-heading-p)
    (let ((hl-text (nth 4 (org-heading-components))))
      (unless (or (null hl-text)
                  (org-string-match-p "^[ \t]*:[^:]+:$" hl-text))
        (beginning-of-line)
        (search-forward hl-text (point-at-eol))
        (replace-string
         hl-text
         (format "[[file:%s.org][%s]]"
                 (org-link-escape hl-text)
                 (org-link-escape hl-text '((?\] . "%5D") (?\[ . "%5B"))))
         nil (- (point) (length hl-text)) (point))))))

(defun org-transpose-paragraphs (arg)
 (interactive)
 (when (and (not (or (org-at-table-p) (org-on-heading-p) (org-at-item-p)))
            (thing-at-point 'sentence))
   (transpose-paragraphs arg)
   (backward-paragraph)
   (re-search-forward "[[:graph:]]")
   (goto-char (match-beginning 0))
   t))

(add-to-list 'org-metaup-hook 
 (lambda () (interactive) (org-transpose-paragraphs -1)))
(add-to-list 'org-metadown-hook 
 (lambda () (interactive) (org-transpose-paragraphs 1)))

(defun org-log-current-defun ()
  (save-excursion
    (org-back-to-heading)
    (if (looking-at org-complex-heading-regexp)
        (match-string 4))))

(add-hook 'org-mode-hook
          (lambda ()
            (make-variable-buffer-local 'add-log-current-defun-function)
            (setq add-log-current-defun-function 'org-log-current-defun)))

(require 'cl)

(defun org-point-at-end-of-empty-headline ()
  "If point is at the end of an empty headline, return t, else nil."
  (and (looking-at "[ \t]*$")
       (save-excursion
         (beginning-of-line 1)
         (looking-at (concat "^\\(\\*+\\)[ \t]+\\(" org-todo-regexp "\\)?[ \t]*")))))

(defun org-level-increment ()
  "Return the number of stars that will be added or removed at a
time to headlines when structure editing, based on the value of
`org-odd-levels-only'."
  (if org-odd-levels-only 2 1))

(defvar org-previous-line-level-cached nil)

(defun org-recalculate-previous-line-level ()
  "Same as `org-get-previous-line-level', but does not use cached
value. It does *set* the cached value, though."
  (set 'org-previous-line-level-cached
       (let ((current-level (org-current-level))
             (prev-level (when (> (line-number-at-pos) 1)
                           (save-excursion
                             (previous-line)
                             (org-current-level)))))
         (cond ((null current-level) nil) ; Before first headline
               ((null prev-level) 0)      ; At first headline
               (prev-level)))))

(defun org-get-previous-line-level ()
  "Return the outline depth of the last headline before the
current line. Returns 0 for the first headline in the buffer, and
nil if before the first headline."
  ;; This calculation is quite expensive, with all the regex searching
  ;; and stuff. Since org-cycle-level won't change lines, we can reuse
  ;; the last value of this command.
  (or (and (eq last-command 'org-cycle-level)
           org-previous-line-level-cached)
      (org-recalculate-previous-line-level)))

(defun org-cycle-level ()
  (interactive)
  (let ((org-adapt-indentation nil))
    (when (org-point-at-end-of-empty-headline)
      (setq this-command 'org-cycle-level) ;Only needed for caching
      (let ((cur-level (org-current-level))
            (prev-level (org-get-previous-line-level)))
        (cond
         ;; If first headline in file, promote to top-level.
         ((= prev-level 0)
          (loop repeat (/ (- cur-level 1) (org-level-increment))
                do (org-do-promote)))
         ;; If same level as prev, demote one.
         ((= prev-level cur-level)
          (org-do-demote))
         ;; If parent is top-level, promote to top level if not already.
         ((= prev-level 1)
          (loop repeat (/ (- cur-level 1) (org-level-increment))
                do (org-do-promote)))
         ;; If top-level, return to prev-level.
         ((= cur-level 1)
          (loop repeat (/ (- prev-level 1) (org-level-increment))
                do (org-do-demote)))
         ;; If less than prev-level, promote one.
         ((< cur-level prev-level)
          (org-do-promote))
         ;; If deeper than prev-level, promote until higher than
         ;; prev-level.
         ((> cur-level prev-level)
          (loop repeat (+ 1 (/ (- cur-level prev-level) (org-level-increment)))
                do (org-do-promote))))
        t))))

(defun org-word-count (beg end
                           &optional count-latex-macro-args?
                           count-footnotes?)
  "Report the number of words in the Org mode buffer or selected region.
Ignores:
- comments
- tables
- source code blocks (#+BEGIN_SRC ... #+END_SRC, and inline blocks)
- hyperlinks (but does count words in hyperlink descriptions)
- tags, priorities, and TODO keywords in headers
- sections tagged as 'not for export'.

The text of footnote definitions is ignored, unless the optional argument
COUNT-FOOTNOTES? is non-nil.

If the optional argument COUNT-LATEX-MACRO-ARGS? is non-nil, the word count
includes LaTeX macro arguments (the material between {curly braces}).
Otherwise, and by default, every LaTeX macro counts as 1 word regardless
of its arguments."
  (interactive "r")
  (unless mark-active
    (setf beg (point-min)
      end (point-max)))
  (let ((wc 0)
    (latex-macro-regexp "\\\\[A-Za-z]+\\(\\[[^]]*\\]\\|\\){\\([^}]*\\)}"))
    (save-excursion
      (goto-char beg)
      (while (< (point) end)
        (cond
         ;; Ignore comments.
         ((or (org-in-commented-line) (org-at-table-p))
          nil)
         ;; Ignore hyperlinks. But if link has a description, count
         ;; the words within the description.
         ((looking-at org-bracket-link-analytic-regexp)
          (when (match-string-no-properties 5)
            (let ((desc (match-string-no-properties 5)))
              (save-match-data
                (incf wc (length (remove "" (org-split-string
                                             desc "\\W")))))))
          (goto-char (match-end 0)))
         ((looking-at org-any-link-re)
          (goto-char (match-end 0)))
         ;; Ignore source code blocks.
         ((org-in-regexps-block-p "^#\\+BEGIN_SRC\\W" "^#\\+END_SRC\\W")
          nil)
         ;; Ignore inline source blocks, counting them as 1 word.
         ((save-excursion
            (backward-char)
            (looking-at org-babel-inline-src-block-regexp))
          (goto-char (match-end 0))
          (setf wc (+ 2 wc)))
         ;; Count latex macros as 1 word, ignoring their arguments.
         ((save-excursion
            (backward-char)
            (looking-at latex-macro-regexp))
          (goto-char (if count-latex-macro-args?
                         (match-beginning 2)
                       (match-end 0)))
          (setf wc (+ 2 wc)))
         ;; Ignore footnotes.
         ((and (not count-footnotes?)
               (or (org-footnote-at-definition-p)
                   (org-footnote-at-reference-p)))
          nil)
         (t
          (let ((contexts (org-context)))
            (cond
             ;; Ignore tags and TODO keywords, etc.
             ((or (assoc :todo-keyword contexts)
                  (assoc :priority contexts)
                  (assoc :keyword contexts)
                  (assoc :checkbox contexts))
              nil)
             ;; Ignore sections marked with tags that are
             ;; excluded from export.
             ((assoc :tags contexts)
              (if (intersection (org-get-tags-at) org-export-exclude-tags
                                :test 'equal)
                  (org-forward-same-level 1)
                nil))
             (t
              (incf wc))))))
        (re-search-forward "\\w+\\W*")))
    (message (format "%d words in %s." wc
                     (if mark-active "region" "buffer")))))

* A headline
,  SCHEDULED: <2012-04-09 lun.>

(defun org-check-misformatted-subtree ()
  "Check misformatted entries in the current buffer."
  (interactive)
  (show-all)
  (org-map-entries
   (lambda ()
     (when (and (move-beginning-of-line 2)
        (not (looking-at org-heading-regexp)))
       (if (or (and (org-get-scheduled-time (point))
            (not (looking-at (concat "^.*" org-scheduled-regexp))))
           (and (org-get-deadline-time (point))
            (not (looking-at (concat "^.*" org-deadline-regexp)))))
       (when (y-or-n-p "Fix this subtree? ")
         (message "Call the function again when you're done fixing this subtree.")
         (recursive-edit))
     (message "All subtrees checked."))))))

(defun org-sort-list-by-checkbox-type ()
  "Sort list items according to Checkbox state."
  (interactive)
  (org-sort-list
   nil ?f
   (lambda ()
     (if (looking-at org-list-full-item-re)
     (cdr (assoc (match-string 3)
             '(("[X]" . 1) ("[-]" . 2) ("[ ]" . 3) (nil . 4))))
       4))))

(defun org-sort-list-by-checkbox-type-1 ()
  (lambda ()
    (if (looking-at org-list-full-item-re)
        (cdr (assoc (match-string 3)
                    '(("[X]" . 1) ("[-]" . 2) ("[ ]" . 3) (nil . 4))))
      4)))

(defun my-align-all-tables ()
  (interactive)
  (org-table-map-tables 'org-table-align 'quietly))

(defun org-time-string-to-seconds (s)
  "Convert a string HH:MM:SS to a number of seconds."
  (cond
   ((and (stringp s)
         (string-match "\\([0-9]+\\):\\([0-9]+\\):\\([0-9]+\\)" s))
    (let ((hour (string-to-number (match-string 1 s)))
          (min (string-to-number (match-string 2 s)))
          (sec (string-to-number (match-string 3 s))))
      (+ (* hour 3600) (* min 60) sec)))
   ((and (stringp s)
         (string-match "\\([0-9]+\\):\\([0-9]+\\)" s))
    (let ((min (string-to-number (match-string 1 s)))
          (sec (string-to-number (match-string 2 s))))
      (+ (* min 60) sec)))
   ((stringp s) (string-to-number s))
   (t s)))

(defun org-time-seconds-to-string (secs)
  "Convert a number of seconds to a time string."
  (cond ((>= secs 3600) (format-seconds "%h:%.2m:%.2s" secs))
        ((>= secs 60) (format-seconds "%m:%.2s" secs))
        (t (format-seconds "%s" secs))))

(defmacro with-time (time-output-p &rest exprs)
  "Evaluate an org-table formula, converting all fields that look
like time data to integer seconds.  If TIME-OUTPUT-P then return
the result as a time value."
  (list
   (if time-output-p 'org-time-seconds-to-string 'identity)
   (cons 'progn
         (mapcar
          (lambda (expr)
            `,(cons (car expr)
                    (mapcar
                     (lambda (el)
                       (if (listp el)
                           (list 'with-time nil el)
                         (org-time-string-to-seconds el)))
                     (cdr expr))))
          `,@exprs))))

(defun org-hex-strip-lead (str)
  (if (and (> (length str) 2) (string= (substring str 0 2) "0x"))
      (substring str 2) str))

(defun org-hex-to-hex (int)
  (format "0x%x" int))

(defun org-hex-to-dec (str)
  (cond
   ((and (stringp str)
         (string-match "\\([0-9a-f]+\\)" (setf str (org-hex-strip-lead str))))
    (let ((out 0))
      (mapc
       (lambda (ch)
         (setf out (+ (* out 16)
                      (if (and (>= ch 48) (<= ch 57)) (- ch 48) (- ch 87)))))
       (coerce (match-string 1 str) 'list))
      out))
   ((stringp str) (string-to-number str))
   (t str)))

(defmacro with-hex (hex-output-p &rest exprs)
  "Evaluate an org-table formula, converting all fields that look
    like hexadecimal to decimal integers.  If HEX-OUTPUT-P then
    return the result as a hex value."
  (list
   (if hex-output-p 'org-hex-to-hex 'identity)
   (cons 'progn
         (mapcar
          (lambda (expr)
            `,(cons (car expr)
                    (mapcar (lambda (el)
                              (if (listp el)
                                  (list 'with-hex nil el)
                                (org-hex-to-dec el)))
                            (cdr expr))))
          `,@exprs))))

(defcustom remember-frame-alist nil
  "Additional frame parameters for dedicated remember frame."
  :type 'alist
  :group 'remember)

(defadvice remember (around remember-frame-parameters activate)
  "Set some frame parameters for the remember frame."
  (let ((default-frame-alist (append remember-frame-alist
                                     default-frame-alist)))
    ad-do-it))

(fset 'getlink
      (lambda (&optional arg) 
        "Keyboard macro." 
        (interactive "p") 
        (kmacro-exec-ring-item (quote ("\C-c\C-l\C-a\C-k\C-g" 0 "%d")) arg)))

(defun my-org-extract-link ()
  "Extract the link location at point and put it on the killring."
  (interactive)
  (when (org-in-regexp org-bracket-link-regexp 1)
    (kill-new (org-link-unescape (org-match-string-no-properties 1)))))

(require 'mm-url) ; to include mm-url-decode-entities-string

(defun my-org-insert-link ()
  "Insert org link where default description is set to html title."
  (interactive)
  (let* ((url (read-string "URL: "))
         (title (get-html-title-from-url url)))
    (org-insert-link nil url title)))

(defun get-html-title-from-url (url)
  "Return content in <title> tag."
  (let (x1 x2 (download-buffer (url-retrieve-synchronously url)))
    (save-excursion
      (set-buffer download-buffer)
      (beginning-of-buffer)
      (setq x1 (search-forward "<title>"))
      (search-forward "</title>")
      (setq x2 (search-backward "<"))
      (mm-url-decode-entities-string (buffer-substring-no-properties x1 x2)))))

(defadvice org-archive-subtree (around my-org-archive-subtree activate)
  (let ((org-archive-location
         (if (save-excursion (org-back-to-heading)
                             (> (org-outline-level) 1))
             (concat (car (split-string org-archive-location "::"))
                     "::* "
                     (car (org-get-outline-path)))
           org-archive-location)))
    ad-do-it))

* Heading
** Subheading
*** Subsubheading

* Heading
** Subsubheading

(defun my-org-inherited-no-file-tags ()
  (let ((tags (org-entry-get nil "ALLTAGS" 'selective))
        (ltags (org-entry-get nil "TAGS")))
    (mapc (lambda (tag)
            (setq tags
                  (replace-regexp-in-string (concat tag ":") "" tags)))
          (append org-file-tags (when ltags (split-string ltags ":" t))))
    (if (string= ":" tags) nil tags)))

(defadvice org-archive-subtree (around my-org-archive-subtree-low-level activate)
  (let ((tags (my-org-inherited-no-file-tags))
        (org-archive-location
         (if (save-excursion (org-back-to-heading)
                             (> (org-outline-level) 1))
             (concat (car (split-string org-archive-location "::"))
                     "::* "
                     (car (org-get-outline-path)))
           org-archive-location)))
    ad-do-it
    (with-current-buffer (find-file-noselect (org-extract-archive-file))
      (save-excursion
        (while (org-up-heading-safe))
        (org-set-tags-to tags)))))

;; (setq org-archive-location "%s_archive::date-tree")
(defadvice org-archive-subtree
  (around org-archive-subtree-to-data-tree activate)
  "org-archive-subtree to date-tree"
  (if
      (string= "date-tree"
               (org-extract-archive-heading
                (org-get-local-archive-location)))
      (let* ((dct (decode-time (org-current-time)))
             (y (nth 5 dct))
             (m (nth 4 dct))
             (d (nth 3 dct))
             (this-buffer (current-buffer))
             (location (org-get-local-archive-location))
             (afile (org-extract-archive-file location))
             (org-archive-location
              (format "%s::*** %04d-%02d-%02d %s" afile y m d
                      (format-time-string "%A" (encode-time 0 0 0 d m y)))))
        (message "afile=%s" afile)
        (unless afile
          (error "Invalid `org-archive-location'"))
        (save-excursion
          (switch-to-buffer (find-file-noselect afile))
          (org-datetree-find-year-create y)
          (org-datetree-find-month-create y m)
          (org-datetree-find-day-create y m d)
          (widen)
          (switch-to-buffer this-buffer))
        ad-do-it)
    ad-do-it))

(defun dmj/org-remove-redundant-tags ()
  "Remove redundant tags of headlines in current buffer.

A tag is considered redundant if it is local to a headline and
inherited by a parent headline."
  (interactive)
  (when (eq major-mode 'org-mode)
    (save-excursion
      (org-map-entries
       '(lambda ()
          (let ((alltags (split-string (or (org-entry-get (point) "ALLTAGS") "") ":"))
                local inherited tag)
            (dolist (tag alltags)
              (if (get-text-property 0 'inherited tag)
                  (push tag inherited) (push tag local)))
            (dolist (tag local)
              (if (member tag inherited) (org-toggle-tag tag 'off)))))
       t nil))))

(defun dmj:org:remove-empty-propert-drawers ()
  "*Remove all empty property drawers in current file."
  (interactive)
  (unless (eq major-mode 'org-mode)
    (error "You need to turn on Org mode for this function."))
  (save-excursion
    (goto-char (point-min))
    (while (re-search-forward ":PROPERTIES:" nil t)
      (save-excursion
    (org-remove-empty-drawer-at "PROPERTIES" (match-beginning 0))))))

(defvar org-agenda-group-by-property nil
  "Set this in org-mode agenda views to group tasks by property")

(defun org-group-bucket-items (prop items)
  (let ((buckets ()))
    (dolist (item items)
      (let* ((marker (get-text-property 0 'org-marker item))
             (pvalue (org-entry-get marker prop t))
             (cell (assoc pvalue buckets)))
        (if cell
            (setcdr cell (cons item (cdr cell)))
          (setq buckets (cons (cons pvalue (list item))
                              buckets)))))
    (setq buckets (mapcar (lambda (bucket)
                            (cons (car bucket)
                                  (reverse (cdr bucket))))
                          buckets))
    (sort buckets (lambda (i1 i2)
                    (string< (car i1) (car i2))))))

(defadvice org-finalize-agenda-entries (around org-group-agenda-finalize
                                               (list &optional nosort))
  "Prepare bucketed agenda entry lists"
  (if org-agenda-group-by-property
      ;; bucketed, handle appropriately
      (let ((text ""))
        (dolist (bucket (org-group-bucket-items
                         org-agenda-group-by-property
                         list))
          (let ((header (concat "Property "
                                org-agenda-group-by-property
                                " is "
                                (or (car bucket) "<nil>") ":\n")))
            (add-text-properties 0 (1- (length header))
                                 (list 'face 'org-agenda-structure)
                                 header)
            (setq text
                  (concat text header
                          ;; recursively process
                          (let ((org-agenda-group-by-property nil))
                            (org-finalize-agenda-entries
                             (cdr bucket) nosort))
                          "\n\n"))))
        (setq ad-return-value text))
    ad-do-it))
(ad-activate 'org-finalize-agenda-entries)

(defun rgr/check-for-clock-out-note()
      (interactive)
      (save-excursion
        (org-back-to-heading)
        (let ((tags (org-get-tags)))
          (and tags (message "tags: %s " tags)
               (when (member "clocknote" tags)
                 (org-add-note))))))

(add-hook 'org-clock-out-hook 'rgr/check-for-clock-out-note)

(setq ba/org-adjust-tags-column t)

(defun ba/org-adjust-tags-column-reset-tags ()
  "In org-mode buffers it will reset tag position according to
`org-tags-column'."
  (when (and
         (not (string= (buffer-name) "*Remember*"))
         (eql major-mode 'org-mode))
    (let ((b-m-p (buffer-modified-p)))
      (condition-case nil
          (save-excursion
            (goto-char (point-min))
            (command-execute 'outline-next-visible-heading)
            ;; disable (message) that org-set-tags generates
            (flet ((message (&rest ignored) nil))
              (org-set-tags 1 t))
            (set-buffer-modified-p b-m-p))
        (error nil)))))

(defun ba/org-adjust-tags-column-now ()
  "Right-adjust `org-tags-column' value, then reset tag position."
  (set (make-local-variable 'org-tags-column)
       (- (- (window-width) (length org-ellipsis))))
  (ba/org-adjust-tags-column-reset-tags))

(defun ba/org-adjust-tags-column-maybe ()
  "If `ba/org-adjust-tags-column' is set to non-nil, adjust tags."
  (when ba/org-adjust-tags-column
    (ba/org-adjust-tags-column-now)))

(defun ba/org-adjust-tags-column-before-save ()
  "Tags need to be left-adjusted when saving."
  (when ba/org-adjust-tags-column
     (setq org-tags-column 1)
     (ba/org-adjust-tags-column-reset-tags)))

(defun ba/org-adjust-tags-column-after-save ()
  "Revert left-adjusted tag position done by before-save hook."
  (ba/org-adjust-tags-column-maybe)
  (set-buffer-modified-p nil))

; automatically align tags on right-hand side
(add-hook 'window-configuration-change-hook
          'ba/org-adjust-tags-column-maybe)
(add-hook 'before-save-hook 'ba/org-adjust-tags-column-before-save)
(add-hook 'after-save-hook 'ba/org-adjust-tags-column-after-save)
(add-hook 'org-agenda-mode-hook '(lambda ()
                                  (setq org-agenda-tags-column (- (window-width)))))

; between invoking org-refile and displaying the prompt (which
; triggers window-configuration-change-hook) tags might adjust,
; which invalidates the org-refile cache
(defadvice org-refile (around org-refile-disable-adjust-tags)
  "Disable dynamically adjusting tags"
  (let ((ba/org-adjust-tags-column nil))
    ad-do-it))
(ad-activate 'org-refile)

(defun my-org-list-files (dirs ext)
  "Function to create list of org files in multiple subdirectories.
This can be called to generate a list of files for
org-agenda-files or org-refile-targets.

DIRS is a list of directories.

EXT is a list of the extensions of files to be included."
  (let ((dirs (if (listp dirs)
                  dirs
                (list dirs)))
        (ext (if (listp ext)
                 ext
               (list ext)))
        files)
    (mapc
     (lambda (x)
       (mapc
        (lambda (y)
          (setq files
                (append files
                        (file-expand-wildcards
                         (concat (file-name-as-directory x) "*" y)))))
        ext))
     dirs)
    (mapc
     (lambda (x)
       (when (or (string-match "/.#" x)
                 (string-match "#$" x))
         (setq files (delete x files))))
     files)
    files))

(defvar my-org-agenda-directories '("~/org/")
  "List of directories containing org files.")
(defvar my-org-agenda-extensions '(".org")
  "List of extensions of agenda files")

(setq my-org-agenda-directories '("~/org/" "~/work/"))
(setq my-org-agenda-extensions '(".org" ".ref"))

(defun my-org-set-agenda-files ()
  (interactive)
  (setq org-agenda-files (my-org-list-files
                          my-org-agenda-directories
                          my-org-agenda-extensions)))

(my-org-set-agenda-files)

(defun my-org-agenda-restrict-files-by-filetag (&optional tag)
  "Restrict org agenda files only to those containing filetag."
  (interactive)
  (let* ((tagslist (my-org-get-all-filetags))
         (ftag (or tag
                   (completing-read "Tag: "
                                    (mapcar 'car tagslist)))))
    (org-agenda-remove-restriction-lock 'noupdate)
    (put 'org-agenda-files 'org-restrict (cdr (assoc ftag tagslist)))
    (setq org-agenda-overriding-restriction 'files)))

(defun my-org-get-all-filetags ()
  "Get list of filetags from all default org-files."
  (let ((files org-agenda-files)
        tagslist x)
    (save-window-excursion
      (while (setq x (pop files))
        (set-buffer (find-file-noselect x))
        (mapc
         (lambda (y)
           (let ((tagfiles (assoc y tagslist)))
             (if tagfiles
                 (setcdr tagfiles (cons x (cdr tagfiles)))
               (add-to-list 'tagslist (list y x)))))
         (my-org-get-filetags)))
      tagslist)))

(defun my-org-get-filetags ()
  "Get list of filetags for current buffer"
  (let ((ftags org-file-tags)
        x)
    (mapcar
     (lambda (x)
       (org-substring-no-properties x))
     ftags)))

(add-hook 'org-agenda-mode-hook '(lambda () (hl-line-mode 1)))

;; hl-line seems to be only for emacs
(require 'highline)
(add-hook 'org-agenda-mode-hook '(lambda () (highline-mode 1)))

;; highline-mode does not work straightaway in tty mode.
;; I use a black background
(custom-set-faces
  '(highline-face ((((type tty) (class color))
                    (:background "white" :foreground "black")))))

;; Patch org-mode to use vertical splitting
(defadvice org-prepare-agenda (after org-fix-split)
  (toggle-window-split))
(ad-activate 'org-prepare-agenda)

;; Make sure you have a sensible value for `appt-message-warning-time'
(defvar bzg-org-clock-in-appt-delay 100
  "Number of minutes for setting an appointment by clocking-in")

(defun bzg-org-clock-in-add-appt (&optional n)
  "Add an appointment for the Org entry at point in N minutes."
  (interactive)
  (save-excursion
    (org-back-to-heading t)
    (looking-at org-complex-heading-regexp)
    (let* ((msg (match-string-no-properties 4))
       (ct-time (decode-time))
       (appt-min (+ (cadr ct-time)
            (or n bzg-org-clock-in-appt-delay)))
       (appt-time ; define the time for the appointment
        (progn (setf (cadr ct-time) appt-min) ct-time)))
      (appt-add (format-time-string
         "%H:%M" (apply 'encode-time appt-time)) msg)
      (if (interactive-p) (message "New appointment for %s" msg)))))

(defadvice org-clock-in (after org-clock-in-add-appt activate)
  "Add an appointment when clocking a task in."
  (bzg-org-clock-in-add-appt))

(defun bzg-org-clock-out-delete-appt nil
  "When clocking out, delete any associated appointment."
  (interactive)
  (save-excursion
    (org-back-to-heading t)
    (looking-at org-complex-heading-regexp)
    (let* ((msg (match-string-no-properties 4)))
      (setq appt-time-msg-list
        (delete nil
            (mapcar
             (lambda (appt)
               (if (not (string-match (regexp-quote msg)
                          (cadr appt))) appt))
             appt-time-msg-list)))
      (appt-check))))

(defadvice org-clock-out (before org-clock-out-delete-appt activate)
  "Delete an appointment when clocking a task out."
  (bzg-org-clock-out-delete-appt))

(defun org-time-to-minutes (time)
  "Convert an HHMM time to minutes"
  (+ (* (/ time 100) 60) (% time 100)))

(defun org-time-from-minutes (minutes)
  "Convert a number of minutes to an HHMM time"
  (+ (* (/ minutes 60) 100) (% minutes 60)))

(defadvice org-agenda-add-time-grid-maybe (around mde-org-agenda-grid-tweakify
                                                  (list ndays todayp))
  (if (member 'remove-match (car org-agenda-time-grid))
      (flet ((extract-window
              (line)
              (let ((start (get-text-property 1 'time-of-day line))
                    (dur (get-text-property 1 'duration line)))
                (cond
                 ((and start dur)
                  (cons start
                        (org-time-from-minutes
                         (+ dur (org-time-to-minutes start)))))
                 (start start)
                 (t nil)))))
        (let* ((windows (delq nil (mapcar 'extract-window list)))
               (org-agenda-time-grid
                (list (car org-agenda-time-grid)
                      (cadr org-agenda-time-grid)
                      (remove-if
                       (lambda (time)
                         (find-if (lambda (w)
                                    (if (numberp w)
                                        (equal w time)
                                      (and (>= time (car w))
                                           (< time (cdr w)))))
                                  windows))
                       (caddr org-agenda-time-grid)))))
          ad-do-it))
    ad-do-it))
(ad-activate 'org-agenda-add-time-grid-maybe)

(add-hook 'find-file-hook 'dmj/disable-vc-for-agenda-files-hook)
(defun dmj/disable-vc-for-agenda-files-hook ()
  "Disable vc-mode for Org agenda files."
  (if (and (fboundp 'org-agenda-file-p)
           (org-agenda-file-p (buffer-file-name)))
      (remove-hook 'find-file-hook 'vc-find-file-hook)
    (add-hook 'find-file-hook 'vc-find-file-hook)))

(("IN PROGRESS" . "dark orange")
 ("WAITING" . "red4")
 ("CANCELED" . "saddle brown"))

(eval-after-load 'org-faces
 '(progn
    (defcustom org-todo-keyword-faces nil
      "Faces for specific TODO keywords.
This is a list of cons cells, with TODO keywords in the car and
faces in the cdr.  The face can be a symbol, a color, or a
property list of attributes, like (:foreground \"blue\" :weight
bold :underline t)."
      :group 'org-faces
      :group 'org-todo
      :type '(repeat
              (cons
               (string :tag "Keyword")
               (choice color (sexp :tag "Face")))))))

(eval-after-load 'org
 '(progn
    (defun org-get-todo-face-from-color (color)
      "Returns a specification for a face that inherits from org-todo
 face and has the given color as foreground. Returns nil if
 color is nil."
      (when color
        `(:inherit org-warning :foreground ,color)))

    (defun org-get-todo-face (kwd)
      "Get the right face for a TODO keyword KWD.
If KWD is a number, get the corresponding match group."
      (if (numberp kwd) (setq kwd (match-string kwd)))
      (or (let ((face (cdr (assoc kwd org-todo-keyword-faces))))
            (if (stringp face)
                (org-get-todo-face-from-color face)
              face))
          (and (member kwd org-done-keywords) 'org-done)
          'org-todo))))

(add-hook 'org-clock-in-prepare-hook
      'my-org-mode-ask-effort)

(defun my-org-mode-ask-effort ()
  "Ask for an effort estimate when clocking in."
  (unless (org-entry-get (point) "Effort")
    (let ((effort
       (completing-read
        "Effort: "
        (org-entry-get-multivalued-property (point) "Effort"))))
      (unless (equal effort "")
    (org-set-property "Effort" effort)))))

(add-hook 'org-clock-in-prepare-hook
      'my-org-mode-add-default-effort)

(defvar org-clock-default-effort "1:00")

(defun my-org-mode-add-default-effort ()
  "Add a default effort estimation."
  (unless (org-entry-get (point) "Effort")
    (org-set-property "Effort" org-clock-default-effort)))

(defun jump-to-org-agenda ()
  (interactive)
  (let ((buf (get-buffer "*Org Agenda*"))
        wind)
    (if buf
        (if (setq wind (get-buffer-window buf))
            (select-window wind)
          (if (called-interactively-p)
              (progn
                (select-window (display-buffer buf t t))
                (org-fit-window-to-buffer)
                ;; (org-agenda-redo)
                )
            (with-selected-window (display-buffer buf)
              (org-fit-window-to-buffer)
              ;; (org-agenda-redo)
              )))
      (call-interactively 'org-agenda-list)))
  ;;(let ((buf (get-buffer "*Calendar*")))
  ;;  (unless (get-buffer-window buf)
  ;;    (org-agenda-goto-calendar)))
  )

(run-with-idle-timer 300 t 'jump-to-org-agenda)

(defun kiwon/org-agenda-redo-in-other-window ()
  "Call org-agenda-redo function even in the non-agenda buffer."
  (interactive)
  (let ((agenda-window (get-buffer-window org-agenda-buffer-name t)))
    (when agenda-window
      (with-selected-window agenda-window (org-agenda-redo)))))
(run-at-time nil 300 'kiwon/org-agenda-redo-in-other-window)

(defun bh/mark-subtree-done ()
  (interactive)
  (org-mark-subtree)
  (let ((limit (point)))
    (save-excursion
      (exchange-point-and-mark)
      (while (> (point) limit)
    (org-todo "DONE")
    (outline-previous-visible-heading 1))
      (org-todo "DONE"))))

;; see http://thread.gmane.org/gmane.emacs.orgmode/42715
(eval-after-load 'org-list
  '(add-hook 'org-checkbox-statistics-hook (function ndk/checkbox-list-complete)))

(defun ndk/checkbox-list-complete ()
  (save-excursion
    (org-back-to-heading t)
    (let ((beg (point)) end)
      (end-of-line)
      (setq end (point))
      (goto-char beg)
      (if (re-search-forward "\\[\\([0-9]*%\\)\\]\\|\\[\\([0-9]*\\)/\\([0-9]*\\)\\]" end t)
            (if (match-end 1)
                (if (equal (match-string 1) "100%")
                    ;; all done - do the state change
                    (org-todo 'done)
                  (org-todo 'todo))
              (if (and (> (match-end 2) (match-beginning 2))
                       (equal (match-string 2) (match-string 3)))
                  (org-todo 'done)
                (org-todo 'todo)))))))

(defun org-to-org-handle-includes ()
  "Copy the contents of the current buffer to OUTFILE,
recursively processing #+INCLUDEs."
  (let* ((s (buffer-string))
     (fname (buffer-file-name))
     (ofname (format "%s.I.org" (file-name-sans-extension fname))))
    (setq result
      (with-temp-buffer
        (insert s)
        (org-export-handle-include-files-recurse)
        (buffer-string)))
    (find-file ofname)
    (delete-region (point-min) (point-max))
    (insert result)
    (save-buffer)))

#+ATTR_LaTeX: placement=[<options>]\footnotesize

\begin{table}[<options>]\footnotesize
...
\end{table}

#+LATEX: {\footnotesize
#+ATTR_LaTeX: align=rr
,| some | table |
,|------+-------|
,| ..   | ..    |
#+LATEX: }

(setq org-export-html-style
 "<style type=\"text/css\">
    <!--/*--><![CDATA[/*><!--*/
      .src             { background-color: #F5FFF5; position: relative; overflow: visible; }
      .src:before      { position: absolute; top: -15px; background: #ffffff; padding: 1px; border: 1px solid #000000; font-size: small; }
      .src-sh:before   { content: 'sh'; }
      .src-bash:before { content: 'sh'; }
      .src-R:before    { content: 'R'; }
      .src-perl:before { content: 'Perl'; }
      .src-sql:before  { content: 'SQL'; }
      .example         { background-color: #FFF5F5; }
    /*]]>*/-->
 </style>")

(define-key org-src-mode-map "\C-c\C-x\C-l" 'org-edit-preview-latex-fragment)

(defun org-edit-preview-latex-fragment ()
  "Write latex fragment from source to parent buffer and preview it."
  (interactive)
  (org-src-in-org-buffer (org-preview-latex-fragment)))

(defun dmj/wl-send-html-message ()
  "Send message as html message.
Convert body of message to html using
  `org-export-region-as-html'."
  (require 'org)
  (save-excursion
    (let (beg end html text)
      (goto-char (point-min))
      (re-search-forward "^--text follows this line--$")
      ;; move to beginning of next line
      (beginning-of-line 2)
      (setq beg (point))
      (if (not (re-search-forward "^--\\[\\[" nil t))
          (setq end (point-max))
        ;; line up
        (end-of-line 0)
        (setq end (point)))
      ;; grab body
      (setq text (buffer-substring-no-properties beg end))
      ;; convert to html
      (with-temp-buffer
        (org-mode)
        (insert text)
        ;; handle signature
        (when (re-search-backward "^-- \n" nil t)
          ;; preserve link breaks in signature
          (insert "\n#+BEGIN_VERSE\n")
          (goto-char (point-max))
          (insert "\n#+END_VERSE\n")
          ;; grab html
          (setq html (org-export-region-as-html
                      (point-min) (point-max) t 'string))))
      (delete-region beg end)
      (insert
       (concat
        "--" "<<alternative>>-{\n"
        "--" "[[text/plain]]\n" text
        "--" "[[text/html]]\n"  html
        "--" "}-<<alternative>>\n")))))

(defun dmj/wl-send-html-message-toggle ()
  "Toggle sending of html message."
  (interactive)
  (setq dmj/wl-send-html-message-toggled-p
        (if dmj/wl-send-html-message-toggled-p
            nil "HTML"))
  (message "Sending html message toggled %s"
           (if dmj/wl-send-html-message-toggled-p
               "on" "off")))

(defun dmj/wl-send-html-message-draft-init ()
  "Create buffer local settings for maybe sending html message."
  (unless (boundp 'dmj/wl-send-html-message-toggled-p)
    (setq dmj/wl-send-html-message-toggled-p nil))
  (make-variable-buffer-local 'dmj/wl-send-html-message-toggled-p)
  (add-to-list 'global-mode-string
               '(:eval (if (eq major-mode 'wl-draft-mode)
                           dmj/wl-send-html-message-toggled-p))))

(defun dmj/wl-send-html-message-maybe ()
  "Maybe send this message as html message.

If buffer local variable `dmj/wl-send-html-message-toggled-p' is
non-nil, add `dmj/wl-send-html-message' to
`mime-edit-translate-hook'."
  (if dmj/wl-send-html-message-toggled-p
      (add-hook 'mime-edit-translate-hook 'dmj/wl-send-html-message)
    (remove-hook 'mime-edit-translate-hook 'dmj/wl-send-html-message)))

(add-hook 'wl-draft-reedit-hook 'dmj/wl-send-html-message-draft-init)
(add-hook 'wl-mail-setup-hook 'dmj/wl-send-html-message-draft-init)
(add-hook 'wl-draft-send-hook 'dmj/wl-send-html-message-maybe)

(defun dmj/org-export-region-as-html-attachment (beg end arg)
  "Export region between BEG and END as html attachment.
If BEG and END are not set, use current subtree.  Region or
subtree is exported to html without header and footer, prefixed
with a mime entity string and pushed to clipboard and killring.
When called with prefix, mime entity is not marked as
attachment."
  (interactive "r\nP")
  (save-excursion
    (let* ((beg (if (region-active-p) (region-beginning)
                  (progn
                    (org-back-to-heading)
                    (point))))
           (end (if (region-active-p) (region-end)
                  (progn
                    (org-end-of-subtree)
                    (point))))
           (html (concat "--[[text/html"
                         (if arg "" "\nContent-Disposition: attachment")
                         "]]\n"
                         (org-export-region-as-html beg end t 'string))))
      (when (fboundp 'x-set-selection)
        (ignore-errors (x-set-selection 'PRIMARY html))
        (ignore-errors (x-set-selection 'CLIPBOARD html)))
      (message "html export done, pushed to kill ring and clipboard"))))

;; - fileconversion version 0.7
;; - DISCLAIMER: Make a backup of your Org files before using
;;   my-org-fileconv-*.
;; - supported formats: hidestarsfile, markdownstarsfile

;; design summary: fileconversion is a round robin of two states
;; linked by two actions:
;; - state v-org-fileconv-level-org-p is nil: the level is “file”
;;   (encoded)
;; - action f-org-fileconv-decode: replace file char with “*”
;; - state v-org-fileconv-level-org-p is t: the level is “Org”
;;   (decoded)
;; - action f-org-fileconv-encode: replace “*” with file char
;; naming convention of prefix:
;; - f-[...]: “my function”, instead of the unspecific prefix “my-”
;; - v-[...]: “my variable”, instead of the unspecific prefix “my-”

(defvar v-org-fileconv-level-org-p nil
  "Whether level of buffer is Org or only file.
nil means the level is file (encoded), non-nil means the level is Org
(decoded).")
(make-variable-buffer-local 'v-org-fileconv-level-org-p)
;; survive a change of major mode that does kill-all-local-variables,
;; e. g. when reentering Org mode through “C-c C-c” on a STARTUP line
(put 'v-org-fileconv-level-org-p 'permanent-local t)

(add-hook 'org-mode-hook 'f-org-fileconv-init
          ;; _append_ to hook to have a higher chance that a message
          ;; from this function will be visible as the last message in
          ;; the minibuffer
          t
          ;; hook addition globally
          nil)

(defun f-org-fileconv-init ()
  (interactive)
  ;; instrument only when converting really from/to an Org _file_, not
  ;; e. g. for a temp Org buffer unrelated to a file like used e. g.
  ;; when calling the old Org exporter
  (when (buffer-file-name)
    (message "INF: f-org-fileconv-init, buffer: %s" (buffer-name))
    (f-org-fileconv-decode)
    ;; the hooks are not permanent-local, this way and as needed they
    ;; will disappear when the major mode of the buffer changes
    (add-hook 'change-major-mode-hook 'f-org-fileconv-encode nil
              ;; hook addition limited to buffer locally
              t)
    (add-hook 'before-save-hook 'f-org-fileconv-encode nil
              ;; hook addition limited to buffer locally
              t)
    (add-hook 'after-save-hook 'f-org-fileconv-decode nil
              ;; hook addition limited to buffer locally
              t)))

(defun f-org-fileconv-re ()
  "Check whether there is a STARTUP line for fileconversion.
If found then return the expressions required for the conversion."
  (save-excursion
    (goto-char (point-min))  ;; beginning-of-buffer not allowed
    (let (re-list (count 0))
      (while (re-search-forward "^#\\+STARTUP:" nil t)
        ;; #+STARTUP: hidestarsfile
        (when (string-match-p "\\bhidestarsfile\\b"
                              (thing-at-point 'line))
          ;; exclude e. g.:
          ;; - line starting with star for bold emphasis
          ;; - line of stars to underline section title in loosely
          ;;   quoted ASCII style (star at end of line)
          (setq re-list '("\\(\\* \\)"  ; common-re
                          ?\ ))         ; file-char
          (setq count (1+ count)))
        ;; #+STARTUP: nbspstarsfile
        (when (string-match-p "\\bnbspstarsfile\\b"
                              (thing-at-point 'line))
          (setq re-list '("\\(\\* \\)"  ; common-re
                          ?\xa0))       ; file-char non-breaking space
          (setq count (1+ count)))
        ;; #+STARTUP: markdownstarsfile
        (when (string-match-p "\\bmarkdownstarsfile\\b"
                              (thing-at-point 'line))
          ;; exclude e. g.:
          ;; - #STARTUP:
          (setq re-list '("\\( \\)"  ; common-re
                          ?#))       ; file-char
          (setq count (1+ count))))
      (when (> count 1)
        (error "More than one fileconversion found"))
      re-list)))

(defun f-org-fileconv-decode ()
  "In headings replace file char with '*'."
  (let ((re-list (f-org-fileconv-re)))
    (when (and re-list (not v-org-fileconv-level-org-p))
      ;; no `save-excursion' to be able to keep point in case of error
      (let* ((common-re (nth 0 re-list))
             (file-char (nth 1 re-list))
             (file-re   (concat "^" (string file-char) "+" common-re))
             (org-re    (concat "^\\*+" common-re))
             len
             (p         (point)))
        (goto-char (point-min))  ;; beginning-of-buffer not allowed
        ;; syntax check
        (when (re-search-forward org-re nil t)
          (goto-char (match-beginning 0))
          (org-reveal)
          (error "Org fileconversion dec: syntax conflict at point"))
        (goto-char (point-min))  ;; beginning-of-buffer not allowed
        ;; substitution
        (with-silent-modifications
          (while (re-search-forward file-re nil t)
            (goto-char (match-beginning 0))
            ;; faster than a lisp call of insert and delete on each
            ;; single char
            (setq len (- (match-beginning 1) (match-beginning 0)))
            (insert-char ?* len)
            (delete-char len)))
        (goto-char p))))

        ;; notes for ediff when only one file has fileconversion:
        ;; - The changes to the buffer with fileconversion until here
        ;;   are not regarded by ediff-files because the first call to
        ;;   diff is made with the bare files directly. Only
        ;;   ediff-update-diffs and ediff-buffers write the decoded
        ;;   buffers to temp files and then call diff with them.
        ;; - Workarounds (choose one):
        ;;   - after ediff-files first do a "!" (ediff-update-diffs)
        ;;     in the "*Ediff Control Panel*"
        ;;   - instead of using ediff-files first open the files and
        ;;     then run ediff-buffers (better for e. g. a script that
        ;;     takes two files as arguments and uses "emacs --eval")

  ;; the level is Org most of all when no fileconversion is in effect
  (setq v-org-fileconv-level-org-p t))

(defun f-org-fileconv-encode ()
  "In headings replace '*' with file char."
  (let ((re-list (f-org-fileconv-re)))
    (when (and re-list v-org-fileconv-level-org-p)
      ;; no `save-excursion' to be able to keep point in case of error
      (let* ((common-re (nth 0 re-list))
             (file-char (nth 1 re-list))
             (file-re   (concat "^" (string file-char) "+" common-re))
             (org-re    (concat "^\\*+" common-re))
             len
             (p         (point)))
        (goto-char (point-min))  ;; beginning-of-buffer not allowed
        ;; syntax check
        (when (re-search-forward file-re nil t)
          (goto-char (match-beginning 0))
          (org-reveal)
          (error "Org fileconversion enc: syntax conflict at point"))
        (goto-char (point-min))  ;; beginning-of-buffer not allowed
        ;; substitution
        (with-silent-modifications
          (while (re-search-forward org-re nil t)
            (goto-char (match-beginning 0))
            ;; faster than a lisp call of insert and delete on each
            ;; single char
            (setq len (- (match-beginning 1) (match-beginning 0)))
            (insert-char file-char len)
            (delete-char len)))
        (goto-char p)
        (setq v-org-fileconv-level-org-p nil))))
  nil)  ;; for the hook